Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------------------ITCGQVSGSLAPCIGFLRS--GGPIPMPCCNGVRSLNAAAR----TTPDRQTACNCLKQAAGSIP--NLNLNNAAGL------PGACGVSIPYKISTSTDCSKVR
1NGK Chain:A ((3-128))
KSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF------------
General information:
TITO was launched using:
RESULT:
Template:
1NGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15242 for 376 contacts (-40.5/contact) +
2D Compatibility (PS) -8051 + (NN) -2070 + (LL) 624
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -27589.0 ( -73.38 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1NGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NGK-query.scw
PDB file :
Tito_Scwrl_1NGK.pdb
: