Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------------------------------------------------------AITCGTVTVSLAPCLNYLKKGGPVPP---ACCNGIKSLNAAAK-----------TTADRQAACNCLKTASTSIA-----GINLSYASSLPGKCGVNVPYKISPSTDCSKVQ--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAA------GSVVDALRAVRNAAPDLPCEVEVDS-LEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29100 for 406 contacts (-71.7/contact) +
2D Compatibility (PS) -8733 + (NN) -3511 + (LL) -64
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -43758.0 ( -107.78 by residue)
QMean score : 0.368
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: