Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------------------------------------------------ITCGQVAS--SLAPCISYLQKGGVPSASC---CSGVKALNSAAS-----------TTADRKTACNCLKNLAGPKS-----GINEGNAASLPGKCKVIVPYWISTFTNCANIK--------
1QPO Chain:A ((116-284))
IATATAAWVDAVRGTKAKIRDTRKTLPGLRALQKYAVRTGGGVNHRLGLGDAALIKDNHVAAAGSVVDALRAVRNA-APDLPCEVEVDSLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAATY-AETGVDY---LAVGALTHSVRVLDIGLDM
General information:
TITO was launched using:
RESULT:
Template:
1QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24708 for 454 contacts (-54.4/contact) +
2D Compatibility (PS) -9321 + (NN) -4549 + (LL) -204
1D Compatibility (HY) -2000 + (ID) 700
Total energy: -41482.0 ( -91.37 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QPO-query.scw
PDB file :
Tito_Scwrl_1QPO.pdb
: