Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
TVTCGQVASALSPCISYLQK---GGAV-----------PAGCCSGIKSLNSAAKTTGDRQAACKCLKTFSSS-V------SG----INYGLASGLPGKCGVSVPYKISPSTDCSKVT
2LVF Chain:A ((16-101))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27360 for 336 contacts (-81.4/contact) +
2D Compatibility (PS) -6055 + (NN) 1414 + (LL) 1340
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -36611.0 ( -108.96 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: