Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCQVTQLAPCASAISSSSPPSSQCCAKIKEQKPCLCQYMKNPSLKAYVSSPNAKKVANACGVPIPKC
M039 Chain:A ((1-105))
VTCQVTQLAPCASAISSSSPPSSQCCAKIKEQKPCLCQYMKNPSLKAYVSSPNAKKVANACGVPIPKC
General information:
TITO was launched using:
RESULT:
Template:
M039.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29849 for 458 contacts (-65.2/contact) +
2D Compatibility (PS) -7141 + (NN) -3462 + (LL) 0
1D Compatibility (HY) -8800 + (ID) 3400
Total energy: -52652.0 ( -114.96 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_M039.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M039-query.scw
PDB file :
Tito_Scwrl_M039.pdb
: