Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------AGECGKSTT-----PDNEAFKLAPCAS-----AAQDENASVSQSCCAQVKKLGQ--NPSCLCAVM------LS--------NTAKMSGADPQIAVTI-------PKRCNIATRPVGYKCGPYTLP----------------------
1O6D Chain:A ((1-147))
LRVRIAV--IGKLDGFIKEGIKHYEKFLRRFCKPEVLEIKRVHRGSIEEIVRKETEDLTNRILPGSFVMVMDKRGEEVSSEEFADFLKDLEMKGKD--ITILIGGPYGLNEEIFAKAHRVFSL--SKMTFTHGMTVLIVLEQIFRAFKIIHGE
General information:
TITO was launched using:
RESULT:
Template:
1O6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21679 for 404 contacts (-53.7/contact) +
2D Compatibility (PS) -8924 + (NN) -819 + (LL) 32
1D Compatibility (HY) -6000 + (ID) 850
Total energy: -38240.0 ( -94.65 by residue)
QMean score : 0.342
(partial model without unconserved sides chains):
PDB file :
Tito_1O6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O6D-query.scw
PDB file :
Tito_Scwrl_1O6D.pdb
: