Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VCDMDNDDFMACQPAAAATTSPTPPDPSAACCATLGKADLKCLCSYKKSPWLSLYNIDPKRAMELPAKCGLSPPADC
M039 Chain:A ((1-95))
VCDMDNDDFMACQPAAAATTSPTPPDPSAACCATLGKADLKCLCSYKKSPWLSLYNIDPKRAMELPAKCGLSPPADC
General information:
TITO was launched using:
RESULT:
Template:
M039.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28074 for 539 contacts (-52.1/contact) +
2D Compatibility (PS) -8422 + (NN) -10193 + (LL) 0
1D Compatibility (HY) -9600 + (ID) 3850
Total energy: -60139.0 ( -111.58 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_M039.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-M039-query.scw
PDB file :
Tito_Scwrl_M039.pdb
: