Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ADISCGTVTSDLIQCVGYLTS---GQGKP----------NPNCCGGVKKLAGLATTTPARRTVCNCLKKAYSQ-F------PN----VNSAAVSNLPGSCGVNLPFKISPQTDCSTIN
2LVF Chain:A ((16-101))
---------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS---------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21255 for 345 contacts (-61.6/contact) +
2D Compatibility (PS) -6139 + (NN) -640 + (LL) 1300
1D Compatibility (HY) -2800 + (ID) 500
Total energy: -30034.0 ( -87.06 by residue)
QMean score : 0.346
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: