Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSCPAVQQTLTTCLLYATN---PHGPP----------PEPCCNGIKTLHGQSQTPLDRRDVCGCLKSMMTN-L---K-L-------NLPAVATLPKECGVDLGYVISPDMDCSKT
2LVF Chain:A ((16-101))
--------QMLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--------DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS--------------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22830 for 337 contacts (-67.7/contact) +
2D Compatibility (PS) -6260 + (NN) -2092 + (LL) 1044
1D Compatibility (HY) -4000 + (ID) 650
Total energy: -34788.0 ( -103.23 by residue)
QMean score : 0.316
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: