Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DLSCGQVLSTLYPCLGYIRNP---G--ASV------------PAPCCNGIRIVNDEAKNTSDRQSVCRCLKSTI-VL----PGIN-----LDALANLPTNCGVNLP--YKITPDIDCNKIPY
1W2Q Chain:A ((22-121))
-------RVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMEN------TQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDV---------
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42410 for 410 contacts (-103.4/contact) +
2D Compatibility (PS) -6926 + (NN) 1734 + (LL) 772
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -49480.0 ( -120.68 by residue)
QMean score : 0.242
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: