Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQ---------------DSNASCNTGPFYKGVIKFLNQFQSRVNSEQSREDYVKESIIISLEDAISPFYSLVDKGVCYTIPNSERITLLDICVNQLVDNHRKIVHGVILLLSR---------------------LRRNRKSMLFNDKYFC--
1DVK Chain:A ((79-247))
MRIQEAIAQDKTISVIIDPSQIGSTEGKPLLSMKCNLYIHEILSRWKASLEAYHPELFLDTKKALFPLLLQLRRN---QLAPDLLISLATVLYHLQQPKEINLAVQSYMKLSIGNVAWPIGVANIMIDERTRLWITSIKRLITFEEWYTSNH
General information:
TITO was launched using:
RESULT:
Template:
1DVK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28012 for 752 contacts (-37.2/contact) +
2D Compatibility (PS) -11539 + (NN) -1306 + (LL) 340
1D Compatibility (HY) -4000 + (ID) 600
Total energy: -45117.0 ( -60.00 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_1DVK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVK-query.scw
PDB file :
Tito_Scwrl_1DVK.pdb
: