Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLLNFNASFSNLYTRNGLIKLDEAFLDYIKSCDEDLFCSLIEAREETTPSSASFQYWTSESRKKEPVSSKNTASSSVSFQCATLESRKHPMSASQMTDSQLIIDLAYLLDGFIAKLFNVEKEIEELKKKHNDFAVIYKCKRLFVQRYALKKYADTENIDIDYVTSELNCFLTLPTTEKIFAEQVMHWFEDRENHKDEIELAAQYAAWRVKNKRSILFNIHRKIDHENLISFSKKEVDKVEVLYSNKIKRRYGFDLTSEKVSLDKALDNAHYCIFCHKQNKDSCSKGLLETSLSFQHMTLKSKKKEEWIPVSSTGMTGKCTQMSEGCIKSLLNNYNTFKRSPLKVELHGCPLEQKISEMNLVKSEGYNIASLAIAMIDNPLCAATGYKICNDCMNSCIYQKQEPVNVPMVETRILDDVLSLPYGFEIYSLLSRWNPLNFQQPLPKENTGKNVLVVGLGPAGFNLAHHLLNDGHNVIAIDGLKIEPLND--DLQPIKDFK-HEKLSERIADGFGGVAEYG--I-TSRWD------KNYLKI----IRLLLERRENFAIYGGI-R-FC-GTVTVDDAFNLGFNHIALALGSGKPRMIKIKNILARGVRMASDFLMSLQLTGALKLDSLANLQVRMPIVIIGAGLTAIDTATEALAYYPIQAEKFLLRYEVLVDKYGKDYVEKDWTEEEREIADEFISHAQLICKEKELAKKENREAKILELMQSLGGVKVVYRKELKDSPSYRLNSEEVQNA-LSEGIYFIENSEPVEIMTDKYSHIESIKLIDTKSHEIKYIKARSILIAAGTEPNTVIATEDKKHFKLSNGYFTHLNSLGEE-IDPILSPKMQNKDRILVYKQGGRTISFFGDLHPSYSGSVVKAMASAKNGYPIISQLLSGANTATVIPISSPITSVLNTGISASHTQLYECYNIRVTFITKDVISVPRHTAIQTLWLKSNLHQKGYHSSSSFLSPQCVTLGFSKIGYKQTQYATFSAKLTKNWTPVLRTGMTLSHRTNEEFFNRIKEQFTAKVVKVQYLTDKVVEVVIKAPLAAKNFQPGQFFRLQNFETNSRKINNTTFAMEGIAVTGTEVNKKKGLISTIVLETGGSTNLCRYLREGEQIILMGPTGRPTEVY |
1GES Chain:A ((3-329)) | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIRE-AIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLG-KNNVDVIKGFARFVDAKTLEV-NGETITADHILIATGG-RPSHPDIPGVE--YGIDSDGFFA--------------LPALPERVAVVGAGYIGVELGGVINGL-GAKTH-LFEMFDAPLPSFD------------------------------------------------------------PMI------SETLVEVMNAEGPQLHTNAIPKAVVKNTDGSL-TLELED---G--RSETVDCLIWAIGREPANDNINLEAAGVKTN--------EKGYIVVDK-------------YQNTNIEGIYAVGDNTG-AVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR-------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1GES.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -162709 for 2452 contacts (-66.4/contact) +
2D Compatibility (PS) -32700 + (NN) -3309 + (LL) 47784
1D Compatibility (HY) -3200 + (ID) 2400
Total energy: -156534.0 ( -63.84 by residue)
QMean score : 0.322
|
|
|