Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELAVGNNAPDF-SLPTDSGE--NLSLSDFFDKKNIVLYFYPKDDTPGCTLEAKGFRDKINDFSSLDTVIIGASRDSIKCHASFKAKYSLP----------FYLISDENAKMLEKYGVWVEKSMFGKKYMGIERTTFLIDKKDKIVRIWEN-VKVSGHVNEVLEAVKKI
4MH3 Chain:A ((28-181))
---AVTQHAPYFKGTAVVSGEFKEISLDDF-KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDS---HFSHLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLAL------RGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF
General information:
TITO was launched using:
RESULT:
Template:
4MH3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57356 for 1030 contacts (-55.7/contact) +
2D Compatibility (PS) -15209 + (NN) -7493 + (LL) 1444
1D Compatibility (HY) -10000 + (ID) 2600
Total energy: -91214.0 ( -88.56 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4MH3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MH3-query.scw
PDB file :
Tito_Scwrl_4MH3.pdb
: