Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSGNVLLTFCSNSGYLRSDMNAVKNLVIWLLIIVITAMFIDSQKDRLRNRFLSTFLPYRGRIQDSRSVEFTKSYDGHFYIQAQVNGHNITFLLDTGATDIVLSQKDALYAGIKLQDIQDFKIYETAKGQIRAGVVQI--PQIKIGNFLINDVQASVNTHSMPHSLLGMSFLKYF--HFTIRGNKLILYCNSTY
2I1A Chain:A ((200-314))
--------------------------------------------------------------------------QVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMI--DKRFI----------IGRIHQAQVKIETQYI-PCSFTVLDT-DIDVLIGLDMLKRHLACVDLKENVLRIAEVE--
General information:
TITO was launched using:
RESULT:
Template:
2I1A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85037 for 697 contacts (-122.0/contact) +
2D Compatibility (PS) -10618 + (NN) -2051 + (LL) 6568
1D Compatibility (HY) -5600 + (ID) 1150
Total energy: -97888.0 ( -140.44 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_2I1A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2I1A-query.scw
PDB file :
Tito_Scwrl_2I1A.pdb
: