Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTFLMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILYSMLF---GVSTTLKAIPYSAIKFTSMLGIFIYGGTGIATVLLGQNFLSYDILLANNVAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK
3QWM Chain:A ((736-865))
--HRRLVCYCRLFEVPD----------PNKPQKLGLHQREIFLFNDLLVVTKIFQNSVTYSFRQSFSLYGMQVLLFENQYYPNGIRLTSSVPGADIKVLINFNAPN--PQDRKKFTDDLRESIAEVQEMEKHRIESELEKQ
General information:
TITO was launched using:
RESULT:
Template:
3QWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100342 for 800 contacts (-125.4/contact) +
2D Compatibility (PS) -13802 + (NN) -7891 + (LL) 2332
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -123303.0 ( -154.13 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_3QWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QWM-query.scw
PDB file :
Tito_Scwrl_3QWM.pdb
: