Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKLTENKKPLVDKEDKKTPPVKGFTKKNKSRRDFITLTTCAMASIGTVSGLWPLIKSMNPSAEVLAMSTVEVNLSGIQEGHGIKVKWQGKPVFIRRRTKQEIKAARVVNVEDLRDPQS-----------DEQRVHKGKD-----EWLIMVGVCTHLGCVPVEHATKDGNGWFCPCHGSYYDTSGRVIGGPAPKNMVVPDYFFPNENVVVIGKKA
1ZRT Chain:R ((11-191))
--------------------------------RRDFLYHATAATGVVVTGAAVWPLINQMNASADVKAMASIFVDVSAVEVGTQLTVKWRGKPVFIRRRDEKDIELARSVPLGALRDTSAENANKPGAEATDENRTLPAFDGTNTGEWLVMLGVCTHLGCVPMGDKSGDFGGWFCPCHGSHYDSAGRIRKGPAPRNLDIPVAAFVDETTIKLG---
General information:
TITO was launched using:
RESULT:
Template:
1ZRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46179 for 1125 contacts (-41.0/contact) +
2D Compatibility (PS) -17689 + (NN) -5090 + (LL) 1404
1D Compatibility (HY) -12800 + (ID) 4050
Total energy: -84404.0 ( -75.03 by residue)
QMean score : 0.353
(partial model without unconserved sides chains):
PDB file :
Tito_1ZRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZRT-query.scw
PDB file :
Tito_Scwrl_1ZRT.pdb
: