Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKILISLLFILIFYSSANAFTLDDKLRDKNMEKRATNLFEMIKCPICSGESLSESGSQVAYNMRKMIREKISDGYTDEQITSELRNSYGDSIIIVPPVKFSTYILWLIPLVIPLIGCFLIRNIIK
3RPF Chain:C ((3-74))
-----------------VEVRFFGPIKEENFFIKAND-LKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKD-----------GDVISLLPPVCGG------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RPF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13151 for 435 contacts (-30.2/contact) +
2D Compatibility (PS) -7298 + (NN) 148 + (LL) 5820
1D Compatibility (HY) -4800 + (ID) 650
Total energy: -19931.0 ( -45.82 by residue)
QMean score : 0.285
(partial model without unconserved sides chains):
PDB file :
Tito_3RPF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RPF-query.scw
PDB file :
Tito_Scwrl_3RPF.pdb
: