Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDDITSVSDQNFKSEVADYKGFVLVDFWAEWCRPCKNLMPRVEQLAKDKKGKIKICKFNIDGGAEVLSKYGIQSIPTLIIFQDGKEIARKIGTINDLSSWVDDEIS
2EIR Chain:B ((1-95))
-SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKCFLDCN
General information:
TITO was launched using:
RESULT:
Template:
2EIR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66126 for 655 contacts (-101.0/contact) +
2D Compatibility (PS) -10350 + (NN) -4854 + (LL) 208
1D Compatibility (HY) -8400 + (ID) 2000
Total energy: -91522.0 ( -139.73 by residue)
QMean score : 0.723
(partial model without unconserved sides chains):
PDB file :
Tito_2EIR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EIR-query.scw
PDB file :
Tito_Scwrl_2EIR.pdb
: