Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKHIYNAVINDLSWKYLFLFGPKGSGKTHLAHIWQSINNAIFINVNNFI-------------------SEIRYSNAFILEDVQDIQ-------DEATLLHCYNYMKENNK-RLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFC-SINRIIEKIDNGS--M-G--SNVTIPFVSTLLKRDTT
3D8B Chain:A ((119-334))
--------------------------------------GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQESSRRIKTEFLVQLDG---SEDRILVVGATNRPQ---EIDEAARRRLV--KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTVRPIAYIDFENAFRTVRP
General information:
TITO was launched using:
RESULT:
Template:
3D8B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95644 for 1182 contacts (-80.9/contact) +
2D Compatibility (PS) -17512 + (NN) -10519 + (LL) 3228
1D Compatibility (HY) -6400 + (ID) 1150
Total energy: -127997.0 ( -108.29 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_3D8B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3D8B-query.scw
PDB file :
Tito_Scwrl_3D8B.pdb
: