Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNLESLP----KHLAIIMDGNSRWANSQGRVKIDGYRKGSEVAYDIAKHCIALAIPYLTLYAFSMENWLRPKEETDCLFDLFYSILTDRDKVNFFHNYNIKLNFVGNLSLLPGKILNQIKESEEMTRKNDGLLLTVAVSYGAKQEIIHAVRNITRK------NIDCVSEDEFEKFLYTKDLPKLDLLIRTGGEKRLSNFLLWQAAYAELYFCDTLWPDFSCQDLSKALEDYTKREKRYGR
1X09 Chain:A ((11-239))
----EKLPAHGCRHVAIIMAGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDS--EVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR------
General information:
TITO was launched using:
RESULT:
Template:
1X09.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144580 for 1721 contacts (-84.0/contact) +
2D Compatibility (PS) -23209 + (NN) -3217 + (LL) 792
1D Compatibility (HY) -14400 + (ID) 4650
Total energy: -189264.0 ( -109.97 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_1X09.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1X09-query.scw
PDB file :
Tito_Scwrl_1X09.pdb
: