Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MRHNIFYNRREFQMIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQLKVHIKEDKYSVVGKVATGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSLNQGWSKISDMFPRDKNAAKQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKNDYPSGYSHGSIRFKYYDLNEGFTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDEIQED-SEIEEIRTAQKDKTLKEVEAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGKVGE-KLALNYFNELIDNKIDEDKKEQFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEKFIEIKTSTSSSIEEPFF-MSLNEMFAMKEYKQKYLILRIFNVSGKEPQFYFIDPYANYSEFKDVDDLIDKVFNVEAIQYKVFGEK |
| 3EDV Chain:A ((2-323)) | SHMRHRLFQLNREVDDLEQWIAEREVVA----------GSHELGQDYEHV--TMLQERFREFARDTGNIGQERVDTVNHLADELINSGHSD---------------AATIAEWKDGLNEAWADLLELI-----DTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPE-ELGRD-----------------------QNTVETLQRMHTTFEHDI--------QALGTQVRQLQEDAARLQAAYAGDKADDIQKRENE--VLEAWKSLLDACESRRVRLVDTGDKFRFFSMVRDLMLWMEDVIRQIEAQEKPRDVSSVELLMNNHQGIKAEIDARNDSF--TTCIELGKSLLARKHYASEEIKEKLLQLTEKRKEMIDKWEDRWEWLRL---------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3EDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 62500 for 2055 contacts (30.4/contact) +
2D Compatibility (PS) -33063 + (NN) -3987 + (LL) 5704
1D Compatibility (HY) -9600 + (ID) 2450
Total energy: 19104.0 ( 9.30 by residue)
QMean score : 0.209
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