Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKNILITGVHGYIGNALKDKL-------------IEQGHQVDQINVRNQLWKSTSFKDYDVLIHTAALVHNNSPQARLSDYMQVNMLLTKQLAQKAKAEDVKQFIFMSTMAVYGKEGQVGKSDQIDTQTPMNPTTNYGISKKFAEQALQELISDSFKVAIVRPPMIYGAHCPGNFQRLMQLSKRLPIIPNINNQRSALYIKHLTAFIDQLISLEVTGVYHPQDSFYFDTSSVMYEIRRQSHRKTVLINMPSVLNKYFNKLSVFRKLFGNLTYSNTLYENNNALEVIPGKMSLVIADIMDETTTKDKA |
| 2GGS Chain:A ((1-273)) | --MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFD-----GEKGNYKEEDIPNPINYYGLSKLLGETFALQD-----DSLIIRTSGIFRNK--GFPIYVYKTLKEGKTVFAFKGYYSPISARKLASAILELLELRKTGIIHVAGE-RISRFELALKIKEKFNLPGEVKEVDEVRGW-----IAKRPYDSSLDSSRARKILSTDFYTLDLDGMVV-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GGS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80124 for 2253 contacts (-35.6/contact) +
2D Compatibility (PS) -26697 + (NN) 4096 + (LL) 2380
1D Compatibility (HY) -3200 + (ID) 2500
Total energy: -106045.0 ( -47.07 by residue)
QMean score : 0.383
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