Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVTDVRLR-KIQTDGRM---------------KALVSITLDEA-FVIH-DLRVI--EGNSGLFVAMPSKRTPDGEFRDIA--HPINSDMRQEIQDA-------VMKVYDETDEVV-----PDKNATSEDSEEA----------
4JDN Chain:A ((6-149))
KAFNNFPITNKIQCNGLFTPSNIETLLGGTEIGKFTVTPKSSGSMFLVSADIIASRMEGGVVLALVREGDSKPCAISYGYSSGVPNLCSLRTSITNTGLTPTTYSLRVGGLESGVVWVNALSNGNDILGITNTSNVSFLEVIPQ
General information:
TITO was launched using:
RESULT:
Template:
4JDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16467 for 582 contacts (-28.3/contact) +
2D Compatibility (PS) -10169 + (NN) 2611 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 950
Total energy: -27775.0 ( -47.72 by residue)
QMean score : 0.209
(partial model without unconserved sides chains):
PDB file :
Tito_4JDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JDN-query.scw
PDB file :
Tito_Scwrl_4JDN.pdb
: