Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEPIKEQEVIDLLASFEHKPV---YLHVETTN----------GAY----ANHFDQRVFNAGTFLRNIQVTYTHAQLKGGNKEPYRIGLKLSNGGWVYV--QG-LTHFEVNEHDEFLIAGFNYEGQLAAALQISERPFNL--------------------------
4CT3 Chain:A ((2-165))
--AKTQAEINKRLDAYAKGTVDSPYRVKKATSYDPSFGVMEAGAIDADGYYHAQQDLITDYVLWLTDNKVRTWGNAKDQIKQSYGTGFKIHENKPSTVPKKGWIAVFTSGSYEQWGHIGIVYDGGNTSTFTILEQNWNGYANKKPTKRVDNYYGLTHFIEIPVKA
General information:
TITO was launched using:
RESULT:
Template:
4CT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19969 for 731 contacts (-27.3/contact) +
2D Compatibility (PS) -12429 + (NN) -3824 + (LL) 312
1D Compatibility (HY) -1200 + (ID) 1200
Total energy: -38310.0 ( -52.41 by residue)
QMean score : 0.098
(partial model without unconserved sides chains):
PDB file :
Tito_4CT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CT3-query.scw
PDB file :
Tito_Scwrl_4CT3.pdb
: