Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLNLGSKKQASFYVACELYKEM-AF----NQHCKLGLATGGTMTDLYEQLVKLLNKNQLNVDNVSTFNLDEYVGLTASHPQSYHYYMDDMLFKQYPYFNRKNIHIPNGDADDMNAEASKYNDVLEQQGQRDIQILGIGENGHIGFNEPGTPFDSVTHIVDLTESTIKANSRYFKNE-DDVPKQAISMGLANILQAKRIILLAFGEKKRAAITHLLNQEISVDVPATLLHKHPNVEIYLDDEACPKNVAKIHVDEMD
1DEA Chain:B ((1-243))
MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVD-IPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPS--------------
General information:
TITO was launched using:
RESULT:
Template:
1DEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141703 for 2026 contacts (-69.9/contact) +
2D Compatibility (PS) -25825 + (NN) -15949 + (LL) 992
1D Compatibility (HY) -20000 + (ID) 3950
Total energy: -206435.0 ( -101.89 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_1DEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DEA-query.scw
PDB file :
Tito_Scwrl_1DEA.pdb
: