Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITT----KHDFKAMHDFLEKEYSTA-IVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPH--LQDWAREGVLLLNTVLTVRQGEANSH-RDIGWETFTDEIIKAVSDYK-EHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPLSAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
3CXM Chain:A ((39-259))
-EWRDFLAPITADSWRKGAFIRIERFLDEEKEKGRVILPPAADIFNAFNSCPFRGLKVVLLGQDPYHDLHQAHGLCFSVLPEVPLPPSLRNIYKELTTDIAGFQAPKHGYLQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHLSQHHPNRLVFLLWGGYAQQKKRLIDANRHVVLENVHPSPLSANRGWFGCRCFSACNEALQRMSHLPMHW-----
General information:
TITO was launched using:
RESULT:
Template:
3CXM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117154 for 1651 contacts (-71.0/contact) +
2D Compatibility (PS) -22882 + (NN) -10042 + (LL) 588
1D Compatibility (HY) -22000 + (ID) 4900
Total energy: -176390.0 ( -106.84 by residue)
QMean score : 0.634
(partial model without unconserved sides chains):
PDB file :
Tito_3CXM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CXM-query.scw
PDB file :
Tito_Scwrl_3CXM.pdb
: