Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHA-----------KNGYYDGITFHRVINDFMIQGGD-PTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
2WFJ Chain:A ((24-176))
------------------------GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFIT------------------TKP----------TPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSC----
General information:
TITO was launched using:
RESULT:
Template:
2WFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43617 for 1068 contacts (-40.8/contact) +
2D Compatibility (PS) -15112 + (NN) -8331 + (LL) 3564
1D Compatibility (HY) -8800 + (ID) 3550
Total energy: -75846.0 ( -71.02 by residue)
QMean score : 0.493
(partial model without unconserved sides chains):
PDB file :
Tito_2WFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WFJ-query.scw
PDB file :
Tito_Scwrl_2WFJ.pdb
: