Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | METLFSGIQPSGIPTIGNYIGALKQFVDVQNDYDCYFCIVDQHAITMPQDRLKLRKQTRQLAAIYLASGIDPDKATLFIQSEVPAHVQAGWMLTTIASVGELERMTQYKDKAQKAVEGIPAGLLTYPPLMAADIVLYNTNIVPVGDDQKQHIELTRNLVDRFNSRYND---VLVKPEIRMP-KVGGRVMSLQDPTRKMSKSDDNAKNFISLLDEPNVAAKKIKSAVTDSD--GIIKFDRDNKPGITNLISIYAGLTDMPIKDIEAKYE-GEGYGKFKGDLAEIVKAFLVEFQEKYESFYNSDK-LDDILDQGRDKAHKVSFKTVKKMEKAMGLGRKR |
3SZ3 Chain:A ((7-340)) | -PIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYANDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTV-NARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRDGAEKASAKALQTLKKVYAAVGFVAR- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3SZ3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -141940 for 2631 contacts (-53.9/contact) +
2D Compatibility (PS) -34720 + (NN) -14086 + (LL) 500
1D Compatibility (HY) -28000 + (ID) 7800
Total energy: -226046.0 ( -85.92 by residue)
QMean score : 0.567
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