Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNECAFGTKDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDCPSKPKHN-
1LMZ Chain:A ((1-187))
MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGCCCYPGNKP
General information:
TITO was launched using:
RESULT:
Template:
1LMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58730 for 1329 contacts (-44.2/contact) +
2D Compatibility (PS) -19672 + (NN) -7478 + (LL) 0
1D Compatibility (HY) -16400 + (ID) 3950
Total energy: -106230.0 ( -79.93 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_1LMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LMZ-query.scw
PDB file :
Tito_Scwrl_1LMZ.pdb
: