Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK
3GYK Chain:A ((14-172))
-----------------------APVLGNPEGDVTVVEFFDYNCPYCRRAMAEV-QGLVDAD---PNVRLVYREWPILGEGSDFAARAALAARQQ--GKYEAFHWALMGMSGK-----ANETGVLRIAREVGLDT---EQLQRDMEAP--EVTAHIAQSMALAQKLGFNGTPSFVVEDALVPGFVEQSQLQDAVDRAR-
General information:
TITO was launched using:
RESULT:
Template:
3GYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41421 for 1300 contacts (-31.9/contact) +
2D Compatibility (PS) -16937 + (NN) -6797 + (LL) 3372
1D Compatibility (HY) -5600 + (ID) 1350
Total energy: -68733.0 ( -52.87 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3GYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GYK-query.scw
PDB file :
Tito_Scwrl_3GYK.pdb
: