Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLD--------NNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
3JVN Chain:A ((3-136))
--PVIRRAKEIDLYCLNSLMYKLHDEHHQQCPD------EKSIARYLDDPECMVYVAEMD-DVIIGFITGHFCELISTVSKLVMMATIDELYIEKEYRREGVAEQLMMRIEQELKDYGVKEIFVEVW--NKGA-------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3JVN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62642 for 785 contacts (-79.8/contact) +
2D Compatibility (PS) -12019 + (NN) -4012 + (LL) 1540
1D Compatibility (HY) -5200 + (ID) 800
Total energy: -83133.0 ( -105.90 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_3JVN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JVN-query.scw
PDB file :
Tito_Scwrl_3JVN.pdb
: