Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MQNQYFTVQENYKERFYQI---PKVFFTSENYKNLTNDMKIAYAILRDRLNLSIKNSW-VDEDGNIYFVYSNEKLMEILNCKKEKLTKIKKGLEN--DGLL-IQKRRGLNKPNILYLMKPIVTERDIYKIEKEENDVE----PYGEKDVRFSN---------VQKFENRTSRS-------SKIERPEVRKSNTNDTDFNDIDFNDTENNDMNDLNDIKYKNEISNHSNHSNQFTHNFDDKEMLLQEFPEQLTNYLLKYDYRDLEIIKAVILKAKKSFNSRHEDMHYMLEDIEDEILTSLKRLKKAIHDRGVKGQKETIKSMQAY--LMQTILTELEETHALYMRRKNMKQYNIFNQ----------------------- |
| 1YT3 Chain:A ((1-375)) | MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLS--GSEIRFHGKTLLALVEKAQTLPEDALPQPMLNLMDMPG--YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YT3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 74171 for 2298 contacts (32.3/contact) +
2D Compatibility (PS) -33638 + (NN) -5833 + (LL) 756
1D Compatibility (HY) -12800 + (ID) 2300
Total energy: 20356.0 ( 8.86 by residue)
QMean score : 0.141
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