Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQNLLIQAENAIALLFLLNDKNLKGKIDLIYIDPPFATNNHFTITNGRATTISNSKNGDIAYSDKVVGMDFMEFLKQRLVLLKELLSEQGSIYVHTDYKIGHYVKVMLDEIFGIQNFRNEITRIKCNPKNFKRIGYGNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTTVPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDIWEFKDPQYPSYPTEKNAQLLDLIIKTSS-NKDSIVLDCFCGSGTTLKSAFLLQ----------------------------------------RKFIGIDNSDLAIQACKNKLETIT---KDLFVSQNFYDFLVF
3LDU Chain:A ((176-296))-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE


General information:
TITO was launched using:
RESULT:

Template: 3LDU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13164 for 542 contacts (-24.3/contact) +
2D Compatibility (PS) -8478 + (NN) -5033 + (LL) 15628
1D Compatibility (HY) -2000 + (ID) 850
Total energy: -13897.0 ( -25.64 by residue)
QMean score : 0.387

(partial model without unconserved sides chains):
PDB file : Tito_3LDU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3LDU-query.scw
PDB file : Tito_Scwrl_3LDU.pdb: