Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVH-----SKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
4F3K Chain:A ((18-245))
--KIGIIGAMEEEVTLLRDKID-NRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFP----DAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKL
General information:
TITO was launched using:
RESULT:
Template:
4F3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140022 for 1987 contacts (-70.5/contact) +
2D Compatibility (PS) -23566 + (NN) -4752 + (LL) 920
1D Compatibility (HY) -15600 + (ID) 4000
Total energy: -187020.0 ( -94.12 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_4F3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F3K-query.scw
PDB file :
Tito_Scwrl_4F3K.pdb
: