Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC
2ROD Chain:B ((17-43))
----------------AELPPEFAAQLRKIGDKVYCTWSAPDM
General information:
TITO was launched using:
RESULT:
Template:
2ROD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3020 for 94 contacts (32.1/contact) +
2D Compatibility (PS) -2689 + (NN) 665 + (LL) 2140
1D Compatibility (HY) -1600 + (ID) 350
Total energy: 1186.0 ( 12.62 by residue)
QMean score : 0.264
(partial model without unconserved sides chains):
PDB file :
Tito_2ROD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2ROD-query.scw
PDB file :
Tito_Scwrl_2ROD.pdb
: