Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIIIPARLKSSRFENKMLEDIFGLPMVVRCAKNA-NLVDECVVACDDESIMKACQKFHIKAVLTSKHHNSGTERCLEAAQILGLKNDERVLNLQGDEPFLEKKVILALLEATQNA-PFMATCAKVIDEEQAKSPNLVKVVLDSQNNALYFSRSLIPFLRDFDAKRQTPLLGHIGIYGFHNKEILEELCALKPCVLEDTEKLEQL-RALYYQKKILVKIVQSESMGIDTKEDLQNALKIFSPNLLKR
2Y6P Chain:A ((4-232))
AVIIPARLGSTRLKEKPLKNLLGKPLIRWVVEGLVKTGERVILATDSERVKEVVEDL-CEVFLTPSDLPSGSDRVLYVVRDL---DVDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLARKD--KEAYERPEDVKVVLDREGYALYFSRSPIPYFRKN---DTFYPLKHVGIYGFRK-ETLMEFGAMPPS-KLEQIEGLEQLRLLENGIKIKVLITENYYHGVDTEEDLKIVEEKLK------
General information:
TITO was launched using:
RESULT:
Template:
2Y6P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146019 for 1776 contacts (-82.2/contact) +
2D Compatibility (PS) -24727 + (NN) -13540 + (LL) 924
1D Compatibility (HY) -11200 + (ID) 3650
Total energy: -198212.0 ( -111.61 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_2Y6P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Y6P-query.scw
PDB file :
Tito_Scwrl_2Y6P.pdb
: