Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLLIALVLFLWWLNLGAKEADFISDWEYGLALYKNPRGVACAKCHGIKGEQQEITFYYEKGEKKILYAPKIN---HLDFKTFKDALSLGKGMMPKY--NLNLEEIQAIYLYITSLGHKDERKDPSKP
3PH2 Chain:B ((2-84))
------------------------ADLATGAKVFSA----NCAACHAGGINLVNAEK--------TLKKEALEKFGMNSIVAITTVVTNGKAGMPAFKGRLTDDQIAAVAAYVLDQAEKGW-------
General information:
TITO was launched using:
RESULT:
Template:
3PH2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37365 for 511 contacts (-73.1/contact) +
2D Compatibility (PS) -8290 + (NN) -2273 + (LL) 3328
1D Compatibility (HY) -1200 + (ID) 800
Total energy: -46600.0 ( -91.19 by residue)
QMean score : 0.359
(partial model without unconserved sides chains):
PDB file :
Tito_3PH2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PH2-query.scw
PDB file :
Tito_Scwrl_3PH2.pdb
: