Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRADNRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGTND
1FQW Chain:A ((5-123))
LKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG-YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKLG
General information:
TITO was launched using:
RESULT:
Template:
1FQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69070 for 941 contacts (-73.4/contact) +
2D Compatibility (PS) -13055 + (NN) -7689 + (LL) -76
1D Compatibility (HY) -14400 + (ID) 2950
Total energy: -107240.0 ( -113.96 by residue)
QMean score : 0.767
(partial model without unconserved sides chains):
PDB file :
Tito_1FQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FQW-query.scw
PDB file :
Tito_Scwrl_1FQW.pdb
: