Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4CK0 Chain:C ((25-121))
---------------------YSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSH---
General information:
TITO was launched using:
RESULT:
Template:
4CK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49482 for 581 contacts (-85.2/contact) +
2D Compatibility (PS) -10288 + (NN) -5597 + (LL) 1452
1D Compatibility (HY) -9200 + (ID) 2050
Total energy: -75165.0 ( -129.37 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_4CK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CK0-query.scw
PDB file :
Tito_Scwrl_4CK0.pdb
: