Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISKV
1VLH Chain:F ((15-160))
----AVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKLIEEVLSDLDGVKVDVHHGLLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEK
General information:
TITO was launched using:
RESULT:
Template:
1VLH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114748 for 1104 contacts (-103.9/contact) +
2D Compatibility (PS) -15756 + (NN) -5631 + (LL) 596
1D Compatibility (HY) -16400 + (ID) 3200
Total energy: -155139.0 ( -140.52 by residue)
QMean score : 0.439
(partial model without unconserved sides chains):
PDB file :
Tito_1VLH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VLH-query.scw
PDB file :
Tito_Scwrl_1VLH.pdb
: