Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFK---GYFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKP----VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLELV
3G4T Chain:B ((4-252))
LKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEF---YDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQ-YTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEI-
General information:
TITO was launched using:
RESULT:
Template:
3G4T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118071 for 1973 contacts (-59.8/contact) +
2D Compatibility (PS) -26544 + (NN) -16478 + (LL) 720
1D Compatibility (HY) -24000 + (ID) 5150
Total energy: -189523.0 ( -96.06 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_3G4T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G4T-query.scw
PDB file :
Tito_Scwrl_3G4T.pdb
: