Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-LDYIIAAHGRYAQEVKDSCQMITGQTTNISAITFTEEMGVTDV---LDAYMAVYSPVN--ETAIIVDI-VGGTPCNAAQMFSTK-HP---EVKVVSGLSLGL-IIP-LSLGESLEEAMLGAKDNIQFVE-QKASHTIVS-DDGEEED-------
1VK9 Chain:A ((2-148))
GSDKIHHHHHHVEKNLLRSALKIFEKK-DLSLLAYSGRSIFESKDSGLKPVVELFKRFDNLEGSLVIDKMVG----KAAASFLLKMKPDHIHAKVISKPALKLMNEYGQSFSYDEKIPFVLGKDG---KSMCPFEKLVLEMDDPEEIIRIVLSKF
General information:
TITO was launched using:
RESULT:
Template:
1VK9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31162 for 853 contacts (-36.5/contact) +
2D Compatibility (PS) -13030 + (NN) -1918 + (LL) 304
1D Compatibility (HY) -4800 + (ID) 1400
Total energy: -52006.0 ( -60.97 by residue)
QMean score : 0.203
(partial model without unconserved sides chains):
PDB file :
Tito_1VK9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK9-query.scw
PDB file :
Tito_Scwrl_1VK9.pdb
: