Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKKAIFDSVSNMEEQIGELYQQLGDLKTNLGEMLEENNRLNLENEHLRRRLSLTDEATPEPKAETEAEHGVMAPNRKEAMQQMIELGEGYDNLVQLYKEGFHVCNVHFGSPRGNDEDCLFCLSLLNKK
3VN0 Chain:A ((221-263))
-------------ERQILRLKQINIQLATKIQHLEFSSSEKEQEIERLNKLLKQNG-------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3VN0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2891 for 162 contacts (17.8/contact) +
2D Compatibility (PS) -4783 + (NN) -4055 + (LL) 5072
1D Compatibility (HY) -400 + (ID) 550
Total energy: -1825.0 ( -11.27 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_3VN0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VN0-query.scw
PDB file :
Tito_Scwrl_3VN0.pdb
: