Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIKSISKSELEVMKIIWDFGRAVQYADVAGKLEEKNYSWKKNTVLTFLTRLVEKNLLSVKKV--GRKNEYYALVSENEYLERQTETFVEEIYEGDVKGLITNLVQNDLISPDELEDLQQFWKRMKSPNE
2RDP Chain:A ((36-146))
-TNYPITPPQFVALQWLLEEG-DLTVGELSNKMY-----LACSTTTDLVDRMERNGLVARVRDEH--VVRI--RLLEKGE------RIIEEVIE-KRQRDLANVLE--SFSDEEIVVFERCLRKLHQE--
General information:
TITO was launched using:
RESULT:
Template:
2RDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -59255 for 657 contacts (-90.2/contact) +
2D Compatibility (PS) -11133 + (NN) -2107 + (LL) 976
1D Compatibility (HY) -7200 + (ID) 650
Total energy: -79369.0 ( -120.81 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_2RDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDP-query.scw
PDB file :
Tito_Scwrl_2RDP.pdb
: