Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRNYHVKFLNEKDVELAEAVCAASEDYYLI-EQDKSASKSDALKIITEIPDGK-TRFDKFVLAVLDENEKPIGLVDIVSDYPRKGRWFIGLLLLTPDARHNGLGKVLHQTIKEWASD-GGADSLALGVLAENEKGRGFFEHLGYTKEETKQ--ASYGGKEQEVSIFTLAIK
2FCK Chain:A ((12-179))
-TQRLQLRLITADEAEELVQCIRQSQTLHQWVDW---FSQQEAEQFIQATRLNWVKAEAYGFGVFERQTQTLVGMVAINEFYHTFNMASLG-YWIGDRYQRQGYGKEALTALILFCFERLELTRLEIVCDPENVPSQALALRCGANREQLAPNRFLYAGEPKAGIVFSL---
General information:
TITO was launched using:
RESULT:
Template:
2FCK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57382 for 1169 contacts (-49.1/contact) +
2D Compatibility (PS) -16933 + (NN) -2918 + (LL) 756
1D Compatibility (HY) -5600 + (ID) 1100
Total energy: -83177.0 ( -71.15 by residue)
QMean score : 0.700
(partial model without unconserved sides chains):
PDB file :
Tito_2FCK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FCK-query.scw
PDB file :
Tito_Scwrl_2FCK.pdb
: