Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LRKSRWLLILLLLIVLVALSACEDSGNGDISGAPAKMEKQHFPPTDTKKGWIELLATDGISSQDNLPCVYEEAESVEKLEVHMKELSTASLTYIYIDGHIVQMEQGGDELSFQIQLSKTELRKGIHELAVVQYQENNPETKKVEFLKRANYEVKQIKND
1YQ2 Chain:A ((139-191))
-----------------------------------------------------------------------------ALTLRFDGVESR--YKVWVNGQEIGVGSGSR-LAQEFDVSD-ALRAGSNLL-VVRVHQ------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YQ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20662 for 301 contacts (-68.6/contact) +
2D Compatibility (PS) -5824 + (NN) -50 + (LL) 7100
1D Compatibility (HY) -5200 + (ID) 550
Total energy: -25186.0 ( -83.67 by residue)
QMean score : 0.315
(partial model without unconserved sides chains):
PDB file :
Tito_1YQ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YQ2-query.scw
PDB file :
Tito_Scwrl_1YQ2.pdb
: