Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVP-NDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLF--FPKSLNVFHWHQDTF-ALPTGSTRLFASEGCLNQAFLYG-ENIIGLQFHFEMEK-----AGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
2VXO Chain:A ((31-222))
-AVVILDAG---YGKVIDRRVRELFVQSEIFPLETPAFAIKEQGFRAIIISGGP--------APWFDP---A---IFTIGKPVLGICYGMQMMNKVFGGTVHK-------VFNISVDNTCSLFRGLQKEEVVLLTHGDSVDKVADGFKVVARSGN-IVAGIANESKKLYGAQFHPEVGLTENGKVILKNFLY--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125622 for 1282 contacts (-98.0/contact) +
2D Compatibility (PS) -16382 + (NN) -178 + (LL) 5008
1D Compatibility (HY) -9600 + (ID) 1850
Total energy: -148624.0 ( -115.93 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_2VXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VXO-query.scw
PDB file :
Tito_Scwrl_2VXO.pdb
: