Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VANKFKTLDKMVYNLLLEKIKNGELVPNEHLA-EEKLAREFGVSRSPLRKAIATLTAQGIVSYHENSGAVLNDCIVD-----------------ADRYVQLMETIEIFVDAAIAKAAHFGYEMDLEKLYARMQEMERFSYLTDLENYFDAHHRFILCLISFAENPYQVRIVKQIFFQMVHFSDGINMFKSVEIREWTNKKSNQIYELLAEGKIELARKTIKSMFAELTIQAYR
1HW1 Chain:A ((5-223))
----AQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLLSVRTNISTIFIRTAFRQHPDKAQEVLA----TANEV--ADHADAFAELDYNIFRGLAFASGNPIYGLILNGMKGLYTRIGRHY--FANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHESGEIW--
General information:
TITO was launched using:
RESULT:
Template:
1HW1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134786 for 1453 contacts (-92.8/contact) +
2D Compatibility (PS) -21981 + (NN) -13527 + (LL) 1276
1D Compatibility (HY) -3200 + (ID) 1600
Total energy: -173818.0 ( -119.63 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_1HW1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HW1-query.scw
PDB file :
Tito_Scwrl_1HW1.pdb
: