Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VRKLGLMTILFWMFLSVQAFAADLEPPMISLEKEQRVFTSGEVISFHVKNPEELKIVLVNEHGQRKLLDGETYTVTDWDLDGNYQAEFYQADISKPVVTVEDLFEVKQLEEVAKDETAPSLKMIEITHDEDVLPTSVLYASAELDDAESGVKQAILLVHSKSNESEMELIRNNYTGEFDAEIPLEKFQLGEELTFQLQLVDFAENEITLDL-----ENTIQLYE--PKAPVLSYD-GSDITNVQKKIGQVG--NRIELTL-DKYTTEFPELETENGKTIPLLWQKTATEWKGSLALTTELSGEIIHIQEMNQYMLVRATS--EPFGDIQLINNSILTGTIHPDFTFISNLYVEVNGQNFPIKRTDNSFTSAEITTTGKITLHWTDWDGQVFSKQMNQEIKPVIEMPDKETIAPPSVIPKEKESLLTSPDPKPSVESHENTPKKQEKKETSTKNKSSSIPFWIPALMIIGVIIFSGNRAMK |
| 4QVG Chain:A ((4-344)) | --ELSALVPVLFGHAAFQQLNAGCQLGLFELLHERGPLSAEEVADALRLPRRSADILLLGTTALGL------STVTD----GGYRN-------GAPIGAAFRDGLWPVLRDIVQYQDKIAYQ----------------PAADYVESLRTGQNAGIRHFPGTTRDLYSRLAAVPGLEELFYRGMHAWSQLSNPVLLAQ--PDFTRVHRVLDVGGGDAVNAVALARAHPSLRVTVLDRPGALEVARKTIAEAGLEERVRTHAADIFTDSYPA------GHDCVLFAHQLVIWS----------------PEQNLTLLRKAYDAVEPGGRVLVFNAFTDDDRTGPLYAALDNVYFTT----LPFRHSTIH--------------RWADCESWLRE----------AGFTDVGRTAPPG---------------------------------------------WTP----HGVVSGSRPR--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4QVG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -20226 for 2496 contacts (-8.1/contact) +
2D Compatibility (PS) -34484 + (NN) -4710 + (LL) 8988
1D Compatibility (HY) -6400 + (ID) 3300
Total energy: -60132.0 ( -24.09 by residue)
QMean score : 0.194
|
|
|