Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNGLHITG-VATSEETNKQAQNLGIPLKSLNDVTEIDITIDGADEIDTDFQGIKGGGGALLREKMVASASLKNIWVVSEEKLVRNLGK-FPLPLEVIPFGWKQVERKLEKEHIQTNLRKQSSGEVYVTNNGNYILDIVNQTFTDAEMWQEKLAQIPGIVEHGLF-LHYVDIIICAKANGEIELIKK
1M0S Chain:B ((4-214))
-LEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTIKD---KIQGAVAASKESEELLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLGSTFPLPVEVIPMARSQVGRKLAALGGSPEYR-----EGVVTDNGNVILDVHNFSILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEG-------
General information:
TITO was launched using:
RESULT:
Template:
1M0S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85996 for 1818 contacts (-47.3/contact) +
2D Compatibility (PS) -22709 + (NN) -6711 + (LL) 1008
1D Compatibility (HY) -17600 + (ID) 4350
Total energy: -136358.0 ( -75.00 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1M0S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M0S-query.scw
PDB file :
Tito_Scwrl_1M0S.pdb
: